MolNFT v1 · #20442 · protein
Human lysozyme-N,N'-diacetylchitobiose complex
1REY: “Human lysozyme-N,N'-diacetylchitobiose complex”. X-ray diffraction, 1 ligand (NAG), 1 pocket (best druggability 0.36). MolNFT v1 #20442 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1REY
- Type
- protein
- Length
- 130 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00695
- Ligands
- NAG
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 130 | 39% helix, 14% strand | P00695 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 61 | 0.36 | 0.78 | 16 | NAG, GOL |
Modifications
Observed in the structure: 4 disulfide, 1 covalent (disulfide, additive adduct).
Compared structures
- 1REY · Human lysozyme-N,N'-diacetylchitobiose complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00695
- Elsewhere: RCSB PDB 1REY · PDBe 1REY · UniProt P00695
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