MolNFT v1 · #20392 · protein
Rubredoxin from desulfovibrio gigas. a molecular model of the oxidized form at 1.4 ångströms resolution
1RDG: “Rubredoxin from desulfovibrio gigas. a molecular model of the oxidized form at 1.4 ångströms resolution”. X-ray diffraction, 2 ligands (FOR, FE). MolNFT v1 #20392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1RDG
- Type
- protein
- Length
- 52 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rubredoxin
- UniProt
- P00270
- Ligands
- FOR, FE
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rubredoxin | protein | 52 | 17% helix, 23% strand | P00270 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 1RDG · Rubredoxin from desulfovibrio gigas. a molecular model of the oxidized form at 1.4… · the same entry in another collection · chain A against A, TM-score 1.00
- P00270 · AlphaFold monomer V2.0 prediction for rubredoxin (P00270) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00270
- Elsewhere: RCSB PDB 1RDG · PDBe 1RDG · UniProt P00270
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.