MolNFT v1 · #20351 · protein

Crystal structure of protein ylba from E. COLI, pfam DUF861

1RC6 · Hypothetical protein ylba: “Crystal structure of protein ylba from E. COLI, pfam DUF861”. X-ray diffraction, 4 pockets (best druggability 0.31). MolNFT v1 #20351 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1RC6
Type: protein
Length: 484 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein ylba
UniProt: P75713
Pockets: 4 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Hypothetical protein ylba	protein	242	5% helix, 52% strand	P75713

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	63	0.31	0.75	15	empty
2	62	0.28	0.73	16	empty
3	53	0.27	0.74	15	empty
4	50	0.27	0.74	15	empty

Interfaces

1 interface between chains.

A–B · 987 Å² buried · 13 hydrogen bonds · protein-protein

Compared structures

1RC6 · Crystal structure of protein Ylba from E. coli, Pfam DUF861 · the same entry in another collection · chain A against A, TM-score 1.00
P75713 · AlphaFold monomer V2.0 prediction for (S)-ureidoglycine aminohydrolase (P75713) · a predicted model of the same protein · chain B against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P75713
Elsewhere: RCSB PDB 1RC6 · PDBe 1RC6 · UniProt P75713

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