MolNFT v1 · #20308 · RNA

ATP binding RNA aptamer in complex with AMP, NMR, 10 structures

1RAW: “ATP binding RNA aptamer in complex with AMP, NMR, 10 structures”. Solution nmr, 1 ligand (AMP), 2 pockets (best druggability 0.41). MolNFT v1 #20308 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1RAW
Type: RNA
Length: 36 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA aptamer
Ligands: AMP
Pockets: 2 · best druggability 0.41

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA aptamer	rna	36	—	—

Ligands and binding sites

AMP · Adenosine monophosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.41	0.75	18	empty
2	56	0.23	0.72	13	empty

Compared structures

1RAW · ATP binding RNA aptamer in complex with AMP, NMR, 10 structures · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1RAW · PDBe 1RAW

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