MolNFT v1 · #20184 · protein
Solution structure of dengue virus capsid protein reveals a new fold
1R6R · Genome polyprotein: “Solution structure of dengue virus capsid protein reveals a new fold”. Solution nmr, 2 pockets (best druggability 0.53). MolNFT v1 #20184 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1R6R
- Type
- protein
- Length
- 160 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Genome polyprotein
- UniProt
- P12823
- Pockets
- 2 · best druggability 0.53
Structure
solution nmr · 1 distinct chain · 59% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Genome polyprotein | protein | 80 | 59% helix, 0% strand | P12823 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.53 | 0.86 | 18 | empty |
| 2 | 71 | 0.48 | 0.83 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1541 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1R6R · Solution Structure of Dengue Virus Capsid Protein Reveals a New Fold · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P12823
- Elsewhere: RCSB PDB 1R6R · PDBe 1R6R · UniProt P12823
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