MolNFT v1 · #20071 · protein
Crystal structure of tRNA pseudouridine synthase trub and its RNA complex: RNA-protein recognition through a combination of rigid docking and induced fit
1R3F · TRNA pseudouridine synthase B: “Crystal structure of tRNA pseudouridine synthase trub and its RNA complex: RNA-protein recognition through a…”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #20071 on GenesisL1: 3D…
- PDB
- 1R3F
- Type
- protein
- Length
- 278 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA pseudouridine synthase B
- EC
- 4.2.1.70
- UniProt
- P60340
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA pseudouridine synthase B (EC 4.2.1.70) | protein | 278 | 28% helix, 35% strand | P60340 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.48 | 0.77 | 22 | empty |
Compared structures
- 1R3F · Crystal Structure of tRNA Pseudouridine Synthase TruB and Its RNA Complex: RNA-protein… · the same entry in another collection · chain A against A, TM-score 1.00
- P60340 · AlphaFold monomer V2.0 prediction for tRNA pseudouridine synthase B (P60340) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60340
- Elsewhere: RCSB PDB 1R3F · PDBe 1R3F · UniProt P60340
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