MolNFT v1 · #20010 · protein

Structure of the ompa-like domain of rmpm from neisseria meningitidis

1R1M · Outer membrane protein class 4: “Structure of the ompa-like domain of rmpm from neisseria meningitidis”. X-ray diffraction, 1 pocket (best druggability 0.37). MolNFT v1 #20010 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1R1M
Type: protein
Length: 140 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein class 4
UniProt: P38367
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein class 4	protein	140	46% helix, 23% strand	P38367

Ligands and binding sites

TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	89	0.37	0.76	19	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

1R1M · Structure of the OmpA-like domain of RmpM from Neisseria meningitidis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38367
Elsewhere: RCSB PDB 1R1M · PDBe 1R1M · UniProt P38367

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