MolNFT v1 · #19926 · protein

Characterization of the malformed, recombinant cytochrome RC552

1QYZ · Cytochrome C-552: “Characterization of the malformed, recombinant cytochrome RC552”. X-ray diffraction, 1 ligand (HCO), 1 pocket (best druggability 0.76). MolNFT v1 #19926 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1QYZ
Type: protein
Length: 130 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C-552
UniProt: P04164
Ligands: HCO
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C-552	protein	130	44% helix, 9% strand	P04164

Ligands and binding sites

HCO · 2-acetyl-protoporphyrin IX · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.76	0.89	33	HCO

Modifications

Observed in the structure: 2 covalent (covalent ligand).

Compared structures

1QYZ · Characterization of the malformed, recombinant cytochrome rC552 · the same entry in another collection · chain A against A, TM-score 1.00
P04164 · AlphaFold monomer V2.0 prediction for cytochrome C-552 (P04164) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04164
Elsewhere: RCSB PDB 1QYZ · PDBe 1QYZ · UniProt P04164

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