MolNFT v1 · #19899 · protein
Structue of V8 protease from staphylococcus aureus
1QY6 · Serine protease: “Structue of V8 protease from staphylococcus aureus”. X-ray diffraction, 1 ligand (K), 1 pocket (best druggability 0.27). MolNFT v1 #19899 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1QY6
- Type
- protein
- Length
- 216 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serine protease
- EC
- 3.4.21.19
- UniProt
- Q99V45
- Ligands
- K
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serine protease (EC 3.4.21.19) | protein | 216 | 12% helix, 40% strand | Q99V45 |
Ligands and binding sites
- K · Potassium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.27 | 0.74 | 13 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99V45
- Elsewhere: RCSB PDB 1QY6 · PDBe 1QY6 · UniProt Q99V45
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