MolNFT v1 · #19882 · protein
Crystal structure of a hemagglutinin component (HA1) from type C clostridium botulinum
1QXM: “Crystal structure of a hemagglutinin component (HA1) from type C clostridium botulinum”. X-ray diffraction, 3 pockets (best druggability 0.41). MolNFT v1 #19882 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1QXM
- Type
- protein
- Length
- 566 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HA1
- UniProt
- P46084
- Pockets
- 3 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | HA1 | protein | 283 | 10% helix, 46% strand | P46084 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 107 | 0.41 | 0.77 | 23 | EDO |
| 2 | 79 | 0.39 | 0.78 | 24 | empty |
| 3 | 76 | 0.38 | 0.78 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1247 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 1QXM · Crystal structure of a hemagglutinin component (HA1) from type C Clostridium botulinum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46084
- Elsewhere: RCSB PDB 1QXM · PDBe 1QXM · UniProt P46084
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.