MolNFT v1 · #19873 · DNA
NMR structure determination of the self complementary DNA dodecamer CGCGAATT*CGCG in which a ribose is inserted between the 3'-oh of T8 and the 5'-phosphate group of C9
1QXB · 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3': “NMR structure determination of the self complementary DNA dodecamer CGCGAATT*CGCG in which a ribose is…”. Solution nmr, 1 ligand (BDR). MolNFT v1 #19873 on GenesisL1: 3D structure, binding sites…
- PDB
- 1QXB
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'
- Ligands
- BDR
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' | dna | 12 | — | — |
Ligands and binding sites
- BDR · beta-D-ribofuranose · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 598 Ų buried · 69 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 4 covalent (covalent ligand).
Compared structures
- 1QXB · NMR structure determination of the self complementary DNA Dodecamer CGCGAATT*CGCG in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1QXB · PDBe 1QXB
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