MolNFT v1 · #19794 · protein

The soluble lytic transglycosylase SLT35 from escherichia COLI in complex with N-acetylglucosamine

1QUT · Lytic murein transglycosylase B: “The soluble lytic transglycosylase SLT35 from escherichia COLI in complex with N-acetylglucosamine”. X-ray diffraction, 2 ligands (NAG, NA), 1 pocket (best druggability 0.52). MolNFT v1 #19794 on…

PDB: 1QUT
Type: protein
Length: 312 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lytic murein transglycosylase B
EC: 3.2.1.-
UniProt: P41052
Ligands: NAG, NA
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 49% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lytic murein transglycosylase B (EC 3.2.1.-)	protein	312	49% helix, 11% strand	P41052

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	314	0.52	0.74	35	NAG

Compared structures

1QUT · The soluble lytic transglycosylase SLT35 from escherichia COLI in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
P41052 · AlphaFold monomer V2.0 prediction for membrane-bound lytic murein transglycosylase B… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P41052
Elsewhere: RCSB PDB 1QUT · PDBe 1QUT · UniProt P41052

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.