MolNFT v1 · #19775 · protein

1.2 a crystal structure of yjgf gene product from E. COLI

1QU9 · Yjgf protein: “1.2 a crystal structure of yjgf gene product from E. COLI”. X-ray diffraction, 5 pockets (best druggability 0.81). MolNFT v1 #19775 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1QU9
Type: protein
Length: 381 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Yjgf protein
UniProt: P39330
Pockets: 5 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Yjgf protein	protein	127	32% helix, 28% strand	P39330

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	135	0.81	0.98	30	empty
2	154	0.50	0.78	28	empty
3	134	0.49	0.79	26	empty
4	127	0.49	0.79	25	empty
5	108	0.43	0.77	15	empty

Interfaces

3 interfaces between chains.

A–C · 930 Å² buried · 14 hydrogen bonds · protein-protein
B–C · 929 Å² buried · 14 hydrogen bonds · protein-protein
A–B · 928 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 modified (nonstandard).

Compared structures

1QU9 · 1.2 a crystal structure of yjgf gene product from E. COLI · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39330
Elsewhere: RCSB PDB 1QU9 · PDBe 1QU9 · UniProt P39330

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