MolNFT v1 · #19664 · protein

X-ray crystal structure analysis of canine milk lysozyme (apo-type)

1QQY · Lysozyme C: “X-ray crystal structure analysis of canine milk lysozyme (apo-type)”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #19664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1QQY
Type: protein
Length: 130 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lysozyme C
EC: 3.2.1.17
UniProt: P81708
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme C (EC 3.2.1.17)	protein	130	36% helix, 11% strand	P81708

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	73	0.34	0.76	19	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

1QQY · X-ray crystal structure analysis of canine milk lysozyme (apo-type) · the same entry in another collection · chain A against A, TM-score 1.00
P81708 · AlphaFold monomer V2.0 prediction for lysozyme C, milk isozyme (P81708) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P81708
Elsewhere: RCSB PDB 1QQY · PDBe 1QQY · UniProt P81708

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