MolNFT v1 · #19438 · protein

ERABUTOXIN

1QKD · Erabutoxin a: “ERABUTOXIN”. X-ray diffraction, 1 pocket (best druggability 0.44). MolNFT v1 #19438 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1QKD
Type: protein
Length: 124 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Erabutoxin a
UniProt: P60775
Pockets: 1 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Erabutoxin a	protein	62	0% helix, 44% strand	P60775

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.44	0.76	25	empty

Interfaces

1 interface between chains.

A–B · 313 Å² buried · 7 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

1QKD · ERABUTOXIN · the same entry in another collection · chain A against A, TM-score 1.00
P60775 · AlphaFold monomer V2.0 prediction for erabutoxin a (P60775) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P60775
Elsewhere: RCSB PDB 1QKD · PDBe 1QKD · UniProt P60775

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