MolNFT v1 · #19395 · protein
Hydroxynitrile-lyase from hevea brasiliensis at atomic resolution
1QJ4 · Hydroxynitrile lyase: “Hydroxynitrile-lyase from hevea brasiliensis at atomic resolution”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.35). MolNFT v1 #19395 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1QJ4
- Type
- protein
- Length
- 256 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hydroxynitrile lyase
- EC
- 4.1.2.39
- UniProt
- P52704
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hydroxynitrile lyase (EC 4.1.2.39) | protein | 256 | 41% helix, 18% strand | P52704 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.35 | 0.78 | 12 | empty |
Compared structures
- 1QJ4 · Hydroxynitrile-lyase from hevea brasiliensis at atomic resolution · the same entry in another collection · chain A against A, TM-score 1.00
- P52704 · AlphaFold monomer V2.0 prediction for (S)-hydroxynitrile lyase (P52704) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P52704
- Elsewhere: RCSB PDB 1QJ4 · PDBe 1QJ4 · UniProt P52704
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