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MolNFT v1 · #19261 · protein

Structure of rat purple acid phosphatase

1QFC · Protein (purple acid phosphatase): “Structure of rat purple acid phosphatase”. X-ray diffraction, 3 ligands (NAG, FE, PO4). MolNFT v1 #19261 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
1QFC
Type
protein
Length
287 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Protein (purple acid phosphatase)
EC
3.1.3.2
UniProt
P29288
Ligands
NAG, FE, PO4

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 26% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AProtein (purple acid phosphatase) (EC 3.1.3.2)protein28723% helix, 26% strandP29288

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
  • FE · Fe (III) ion · metal · 2 copies · chains A
  • PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide, 1 glycan (disulfide, N-glycosylation).

Compared structures

  • 1QFC · Structure of rat purple acid phosphatase · the same entry in another collection · chain A against A, TM-score 1.00
  • P29288 · AlphaFold monomer V2.0 prediction for tartrate-resistant acid phosphatase type 5 (P29288) · a predicted model of the same protein · chain A against A, TM-score 0.98

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