MolNFT v1 · #191591 · protein
Structure of papain refined at 1.65 ångströms resolution
9PAP: “Structure of papain refined at 1.65 ångströms resolution”. X-ray diffraction, 1 pocket (best druggability 0.30). MolNFT v1 #191591 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 9PAP
- Type
- protein
- Length
- 212 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Papain
- EC
- 3.4.22.2
- UniProt
- P00784
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Papain (EC 3.4.22.2) | protein | 212 | 26% helix, 21% strand | P00784 |
Ligands and binding sites
- MOH · Methanol · additive · 29 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.30 | 0.75 | 17 | MOH |
Modifications
Observed in the structure: 3 disulfide, 1 modified (disulfide, oxidation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00784
- Elsewhere: RCSB PDB 9PAP · PDBe 9PAP · UniProt P00784
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