MolNFT v1 · #191470 · protein
Crystal structure of photoactive yellow protein (pyp); F96OCNF I49T construct
8DZY: “Crystal structure of photoactive yellow protein (pyp); F96OCNF I49T construct”. X-ray diffraction, 1 ligand (HC4). MolNFT v1 #191470 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DZY
- Type
- protein
- Length
- 125 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Photoactive yellow protein
- UniProt
- P16113
- Ligands
- HC4
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photoactive yellow protein | protein | 125 | 29% helix, 28% strand | P16113 |
Ligands and binding sites
- HC4 · 4'-hydroxycinnamic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, nonstandard).
Compared structures
- 8DZY · Crystal structure of photoactive yellow protein (PYP); F96oCNF I49T construct · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16113
- Elsewhere: RCSB PDB 8DZY · PDBe 8DZY · UniProt P16113
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