MolNFT v1 · #191455 · protein
Crystal structure of NAD bound dtdp-glucose 4,6-dehydratase from elizabethkingia anophelis
8DU1: “Crystal structure of NAD bound dtdp-glucose 4,6-dehydratase from elizabethkingia anophelis”. X-ray diffraction, 3 ligands (NAD, MG, CL). MolNFT v1 #191455 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DU1
- Type
- protein
- Length
- 1,432 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A077ELH2
- Ligands
- NAD, MG, CL
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 361 | — | A0A077ELH2 |
| B | — | protein | 359 | — | A0A077ELH2 |
| C | — | protein | 353 | — | A0A077ELH2 |
| D | — | protein | 359 | — | A0A077ELH2 |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · 4 copies · chains A, B, C, D
- MG · Magnesium ion · metal · 2 copies · chains C, D
- CL · Chloride ion · ion · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 12 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8DU1 · Crystal Structure of NAD bound dTDP-glucose 4,6-dehydratase from Elizabethkingia anophelis · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A077ELH2
- Elsewhere: RCSB PDB 8DU1 · PDBe 8DU1 · UniProt A0A077ELH2
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