MolNFT v1 · #191447 · DNA + RNA

High resolution NMR structure of the D(GCGTCAGG)R(CCUGACGC) hybrid, minimized average structure

8DRH · DNA (5'-D(*GP*CP*GP*TP*CP*AP*GP*G)-3'): “High resolution NMR structure of the D(GCGTCAGG)R(CCUGACGC) hybrid, minimized average structure”. Solution nmr. MolNFT v1 #191447 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 8DRH
Type: DNA + RNA
Length: 16 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*GP*CP*GP*TP*CP*AP*GP*G)-3'); RNA (5'-R(*CP*CP*UP*GP*AP*CP*GP*C)-3')

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA (5'-D(GPCPGPTPCPAPGPG)-3')	dna	8	—	—
B	RNA (5'-R(CPCPUPGPAPCPGPC)-3')	rna	8	—	—

Interfaces

1 interface between chains.

A–B · 378 Å² buried · 46 hydrogen bonds · nucleic-nucleic

Compared structures

8DRH · High resolution NMR structure of the D(GCGTCAGG)R(CCUGACGC) hybrid, minimized average… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 8DRH · PDBe 8DRH

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