MolNFT v1 · #191423 · protein
Crystal structure of SARS-cov-2 main protease in complex with an inhibitor tkb-198
8DOY: “Crystal structure of SARS-cov-2 main protease in complex with an inhibitor tkb-198”. X-ray diffraction. MolNFT v1 #191423 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DOY
- Type
- protein
- Length
- 606 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTD1
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 303 | — | P0DTD1 |
Ligands and binding sites
- DMS · Dimethyl sulfoxide · additive · 2 copies · chains A, B
- 1PE · Pentaethylene glycol · additive · chains A
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A
- PG0 · 2-(2-methoxyethoxy)ethanol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8DOY · Crystal structure of SARS-CoV-2 main protease in complex with an inhibitor TKB-198 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTD1
- Elsewhere: RCSB PDB 8DOY · PDBe 8DOY · UniProt P0DTD1
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