MolNFT v1 · #191371 · protein + DNA
Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex
8DF9: “Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA complex”. X-ray diffraction, 2 ligands (MG, K). MolNFT v1 #191371 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 8DF9
- Type
- protein + DNA
- Length
- 1,766 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q977W1
- Ligands
- MG, K
Structure
x-ray diffraction · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 781 | — | Q977W1 |
| B | — | protein | 845 | — | Q977W1 |
| S | — | dna | 33 | — | — |
| T | — | dna | 33 | — | — |
| U | — | dna | 17 | — | — |
| V | — | dna | 20 | — | — |
| W | — | dna | 18 | — | — |
| X | — | dna | 19 | — | — |
Ligands and binding sites
- MG · Magnesium ion · metal · 12 copies · chains A, B, S, T
- K · Potassium ion · metal · 2 copies · chains S, T
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 8DF9 · Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair asymmetric DNA… · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q977W1
- Elsewhere: RCSB PDB 8DF9 · PDBe 8DF9 · UniProt Q977W1
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