MolNFT v1 · #191170 · protein
Crystal structure of deinococcus radiodurans endonuclease III-1 R61Q variant
8A5F: “Crystal structure of deinococcus radiodurans endonuclease III-1 R61Q variant”. X-ray diffraction, 2 ligands (SF4, MG), 2 pockets (best druggability 0.49). MolNFT v1 #191170 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 8A5F
- Type
- protein
- Length
- 237 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endonuclease III
- UniProt
- Q9RRQ0
- Ligands
- SF4, MG
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 64% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endonuclease III | protein | 237 | 64% helix, 0% strand | Q9RRQ0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 208 | 0.49 | 0.76 | 33 | empty |
| 2 | 89 | 0.38 | 0.76 | 17 | empty |
Compared structures
- 8A5F · Crystal structure of Deinococcus radiodurans Endonuclease III-1 R61Q variant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RRQ0
- Elsewhere: RCSB PDB 8A5F · PDBe 8A5F · UniProt Q9RRQ0
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