MolNFT v1 · #190958 · protein
Cryo-EM structure of SARS-cov-2 spike : H11-H4 Q98R H100E nanobody complex in 2UP1DOWN conformation
7Z9R: “Cryo-EM structure of SARS-cov-2 spike : H11-H4 Q98R H100E nanobody complex in 2UP1DOWN conformation”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #190958 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Z9R
- Type
- protein
- Length
- 3,349 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2, P10104
- Ligands
- NAG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 988 | — | P0DTC2, P10104 |
| B | — | protein | 992 | — | P0DTC2, P10104 |
| C | — | protein | 991 | — | P0DTC2, P10104 |
| Y, X, Z | — | protein | 126 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 66 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Z9R · CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE : H11-H4 Q98R H100E nanobody complex in 2Up1Down… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt P10104
- Elsewhere: RCSB PDB 7Z9R · PDBe 7Z9R · UniProt P0DTC2 · UniProt P10104
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