MolNFT v1 · #190925 · protein
Crystal structure of aminotransferase-like protein from variovorax paradoxus
7Z79: “Crystal structure of aminotransferase-like protein from variovorax paradoxus”. X-ray diffraction, 2 ligands (PLP, PO4). MolNFT v1 #190925 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Z79
- Type
- protein
- Length
- 1,793 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- T1XIY1
- Ligands
- PLP, PO4
Structure
x-ray diffraction · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 300 | — | T1XIY1 |
| B | — | protein | 306 | — | T1XIY1 |
| C | — | protein | 297 | — | T1XIY1 |
| D | — | protein | 294 | — | T1XIY1 |
| E | — | protein | 300 | — | T1XIY1 |
| F | — | protein | 296 | — | T1XIY1 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · 6 copies · chains A, B, C, D, E, F
- PO4 · Phosphate ion · ion · 6 copies · chains A, B, C, D, E, F
- GOL · Glycerol · additive · 9 copies · chains A, B, C, D, E, F
- PEG · Di(hydroxyethyl)ether · additive · 6 copies · chains A, B, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Z79 · Crystal structure of aminotransferase-like protein from Variovorax paradoxus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt T1XIY1
- Elsewhere: RCSB PDB 7Z79 · PDBe 7Z79 · UniProt T1XIY1
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