MolNFT v1 · #190806 · protein
Crystal structure of the O-fucosylated form of TSRS1-3 from the human thrombospondin 1
7YYK · Thrombospondin-1: “Crystal structure of the O-fucosylated form of TSRS1-3 from the human thrombospondin 1”. X-ray diffraction, 1 ligand (FUC). MolNFT v1 #190806 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YYK
- Type
- protein
- Length
- 114 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Thrombospondin-1
- UniProt
- P07996
- Ligands
- FUC
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Thrombospondin-1 | protein | 114 | 0% helix, 28% strand | P07996 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 6 disulfide, 2 glycan (disulfide, O-glycosylation).
Compared structures
- 7YYK · Crystal structure of the O-fucosylated form of TSRs1-3 from the human thrombospondin 1 · the same entry in another collection · chain A against A, TM-score 1.00
- P07996 · AlphaFold monomer V2.0 prediction for thrombospondin-1 (P07996) · a predicted model of the same protein · chain A against A, TM-score 0.46
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P07996
- Elsewhere: RCSB PDB 7YYK · PDBe 7YYK · UniProt P07996
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