MolNFT v1 · #190783 · protein
Drosophila melanogaster JMJD7 (DMJMJD7) in complex with mn and 2,4- pdca
7YXJ: “Drosophila melanogaster JMJD7 (DMJMJD7) in complex with mn and 2,4- pdca”. X-ray diffraction, 2 ligands (PD2, MN). MolNFT v1 #190783 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YXJ
- Type
- protein
- Length
- 1,238 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9VU77
- Ligands
- PD2, MN
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 312 | — | Q9VU77 |
| B | — | protein | 309 | — | Q9VU77 |
| C | — | protein | 309 | — | Q9VU77 |
| D | — | protein | 308 | — | Q9VU77 |
Ligands and binding sites
- PD2 · Pyridine-2,4-dicarboxylic acid · ligand · 4 copies · chains A, B, C, D
- MN · Manganese (II) ion · metal · 4 copies · chains A, B, C, D
- EDO · 1,2-ethanediol · additive · 13 copies · chains A, B, C, D
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7YXJ · Drosophila melanogaster JMJD7 (dmJMJD7) in complex with Mn and 2,4-PDCA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VU77
- Elsewhere: RCSB PDB 7YXJ · PDBe 7YXJ · UniProt Q9VU77
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