MolNFT v1 · #190746 · protein
SARS-cov-2 spike (6P) in complex with 3 R1-32 fabs and 3 ACE2
7YEG: “SARS-cov-2 spike (6P) in complex with 3 R1-32 fabs and 3 ACE2”. Electron microscopy, 2 ligands (NAG, ZN). MolNFT v1 #190746 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7YEG
- Type
- protein
- Length
- 6,306 residues
- Chains
- 12
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2, Q9BYF1
- Ligands
- NAG, ZN
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 1066 | — | P0DTC2 |
| E, J, M | — | protein | 596 | — | Q9BYF1 |
| H, G, N | — | protein | 227 | — | — |
| L, I, O | — | protein | 213 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 48 copies · chains A, B, C, E, J, M
- ZN · Zinc ion · metal · 3 copies · chains E, J, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7YEG · SARS-CoV-2 Spike (6P) in complex with 3 R1-32 Fabs and 3 ACE2 · the same entry in another collection · chain N against N, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Every structure of UniProt Q9BYF1
- Elsewhere: RCSB PDB 7YEG · PDBe 7YEG · UniProt P0DTC2 · UniProt Q9BYF1
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