MolNFT v1 · #190735 · protein
Cryo-EM structure of apo SARS-cov-2 omicron spike protein (S-2P-gsas)
7Y9S: “Cryo-EM structure of apo SARS-cov-2 omicron spike protein (S-2P-gsas)”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #190735 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Y9S
- Type
- protein
- Length
- 3,126 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 1041 | — | P0DTC2 |
| B | — | protein | 1044 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 53 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Y9S · Cryo-EM structure of apo SARS-CoV-2 Omicron spike protein (S-2P-GSAS) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7Y9S · PDBe 7Y9S · UniProt P0DTC2
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