MolNFT v1 · #190726 · protein
Symmetry-expanded and locally refined protomer structure of ipec-J2 cell-derived pedv PT52 S with a ctd-open conformation
7Y6V: “Symmetry-expanded and locally refined protomer structure of ipec-J2 cell-derived pedv PT52 S with a ctd-open…”. Electron microscopy, 4 ligands (NAG, BMA, FUC). MolNFT v1 #190726 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 7Y6V
- Type
- protein
- Length
- 1,224 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1Y0DD46
- Ligands
- NAG, BMA, FUC, MAN
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1224 | — | A0A1Y0DD46 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 33 copies · chains A
- BMA · beta-D-mannopyranose · sugar · 6 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · 4 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 2 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Y6V · Symmetry-expanded and locally refined protomer structure of IPEC-J2 cell-derived PEDV… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Y0DD46
- Elsewhere: RCSB PDB 7Y6V · PDBe 7Y6V · UniProt A0A1Y0DD46
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