MolNFT v1 · #190724 · protein
Cryo-EM MAP of ipec-J2 cell-derived pedv PT52 S protein one D0-down and two D0-up
7Y6T: “Cryo-EM MAP of ipec-J2 cell-derived pedv PT52 S protein one D0-down and two D0-up”. Electron microscopy, 4 ligands (NAG, BMA, FUC). MolNFT v1 #190724 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7Y6T
- Type
- protein
- Length
- 3,446 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A1Y0DD46
- Ligands
- NAG, BMA, FUC, MAN
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 1124 | — | A0A1Y0DD46 |
| C | — | protein | 1098 | — | A0A1Y0DD46 |
| B | — | protein | 1224 | — | A0A1Y0DD46 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 82 copies · chains A, C, B
- BMA · beta-D-mannopyranose · sugar · 18 copies · chains A, C, B
- FUC · alpha-L-fucopyranose · sugar · 9 copies · chains A, C, B
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7Y6T · Cryo-EM map of IPEC-J2 cell-derived PEDV PT52 S protein one D0-down and two D0-up · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Y0DD46
- Elsewhere: RCSB PDB 7Y6T · PDBe 7Y6T · UniProt A0A1Y0DD46
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