MolNFT v1 · #190567 · protein
Crystal structure of the aminopropyltransferase, spee from hyperthermophilic crenarchaeon, pyrobaculum calidifontis in complex with 5'-methylthioadenosine (mta) & aminopropylagmatine
7XII: “Crystal structure of the aminopropyltransferase, spee from hyperthermophilic crenarchaeon, pyrobaculum…”. X-ray diffraction, 2 ligands (MTA, AG3). MolNFT v1 #190567 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7XII
- Type
- protein
- Length
- 1,148 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A3MU81
- Ligands
- MTA, AG3
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 286 | — | A3MU81 |
| B, D | — | protein | 288 | — | A3MU81 |
Ligands and binding sites
- MTA · 5'-deoxy-5'-methylthioadenosine · ligand · 4 copies · chains A, B, C, D
- AG3 · 1-{4-[(3-aminopropyl)amino]butyl}guanidine · ligand · 4 copies · chains A, B, C, D
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7XII · Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic… · the same entry in another collection · chain B against B, TM-score 1.00
- A3MU81 · AlphaFold monomer V2.0 prediction for polyamine aminopropyltransferase (A3MU81) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3MU81
- Elsewhere: RCSB PDB 7XII · PDBe 7XII · UniProt A3MU81
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