MolNFT v1 · #190564 · protein
Crystal structure of the aminopropyltransferase, spee from hyperthermophilic crenarchaeon, pyrobaculum calidifontis in complex with 5'-methylthioadenosine (mta) alone or together with spermidine or thermospermine
7XIF: “Crystal structure of the aminopropyltransferase, spee from hyperthermophilic crenarchaeon, pyrobaculum…”. X-ray diffraction, 3 ligands (MTA, SPD, TER). MolNFT v1 #190564 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7XIF
- Type
- protein
- Length
- 3,434 residues
- Chains
- 12
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A3MU81
- Ligands
- MTA, SPD, TER
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, E, F, G, H, I, J, K, L | — | protein | 286 | — | A3MU81 |
| D | — | protein | 288 | — | A3MU81 |
Ligands and binding sites
- MTA · 5'-deoxy-5'-methylthioadenosine · ligand · 12 copies · chains A, B, C, D, E, F, G, H, I, J, K, L
- SPD · Spermidine · ligand · 5 copies · chains A, B, C, D, H
- TER · N-(3-amino-propyl)-N-(5-aminopropyl)-1,4-diaminobutane · ligand · 3 copies · chains E, F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7XIF · Crystal structure of the aminopropyltransferase, SpeE from hyperthermophilic… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A3MU81
- Elsewhere: RCSB PDB 7XIF · PDBe 7XIF · UniProt A3MU81
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