MolNFT v1 · #190464 · protein
3D model of the 3-rbd up single trimeric spike protein of SARS-COV2 in the presence of synthetic peptide sih-5.
7X7N: “3D model of the 3-rbd up single trimeric spike protein of SARS-COV2 in the presence of synthetic peptide…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #190464 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7X7N
- Type
- protein
- Length
- 3,320 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 1033 | — | P0DTC2 |
| C | — | protein | 1033 | — | P0DTC2 |
| A | — | protein | 1026 | — | P0DTC2 |
| D, E, H, I, F, G | — | protein | 38 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 39 copies · chains B, A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7X7N · 3D model of the 3-RBD up single trimeric spike protein of SARS-CoV2 in the presence of… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7X7N · PDBe 7X7N · UniProt P0DTC2
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