MolNFT v1 · #190400 · protein
S protein of SARS-cov-2 in complex with 2G1
7X08: “S protein of SARS-cov-2 in complex with 2G1”. Electron microscopy, 2 ligands (EIC, NAG). MolNFT v1 #190400 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7X08
- Type
- protein
- Length
- 4,572 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- EIC, NAG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | — | protein | 1099 | — | P0DTC2 |
| H, I, J | — | protein | 214 | — | — |
| L, M, N | — | protein | 211 | — | — |
Ligands and binding sites
- EIC · Linoleic acid · ligand · 3 copies · chains A, C, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 78 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7X08 · S protein of SARS-CoV-2 in complex with 2G1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7X08 · PDBe 7X08 · UniProt P0DTC2
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