MolNFT v1 · #190351 · protein
Crystal structure of saccharomyces cerevisiae SFH2 complexed with squalene
7WWD · Phosphatidylinositol transfer protein CSR1: “Crystal structure of saccharomyces cerevisiae SFH2 complexed with squalene”. X-ray diffraction, 1 ligand (SQL), 6 pockets (best druggability 0.86). MolNFT v1 #190351 on GenesisL1: 3D…
- PDB
- 7WWD
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylinositol transfer protein CSR1
- UniProt
- Q06705
- Ligands
- SQL
- Pockets
- 6 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylinositol transfer protein CSR1 | protein | 357 | 58% helix, 9% strand | Q06705 |
Ligands and binding sites
- SQL · (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2, 6,10,14,18,22-hexaene · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 483 | 0.86 | 0.92 | 50 | SQL |
| 2 | 122 | 0.78 | 0.97 | 22 | empty |
| 3 | 315 | 0.55 | 0.75 | 39 | empty |
| 4 | 134 | 0.53 | 0.81 | 32 | empty |
| 5 | 91 | 0.46 | 0.80 | 11 | empty |
Compared structures
- 7WWD · Crystal structure of Saccharomyces cerevisiae Sfh2 complexed with squalene · the same entry in another collection · chain A against A, TM-score 1.00
- Q06705 · AlphaFold monomer V2.0 prediction for phosphatidylinositol transfer protein CSR1 (Q06705) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q06705
- Elsewhere: RCSB PDB 7WWD · PDBe 7WWD · UniProt Q06705
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