MolNFT v1 · #190243 · protein
Cryo-EM structure of SARS-cov-2 omicron S6P trimer in complex with neutralizing antibody vacw-209 (local refinement)
7WP5: “Cryo-EM structure of SARS-cov-2 omicron S6P trimer in complex with neutralizing antibody vacw-209 (local…”. Electron microscopy, 1 ligand (NAG). MolNFT v1 #190243 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7WP5
- Type
- protein
- Length
- 425 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A5C2GQT9, P0DTC2
- Ligands
- NAG
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | — | protein | 111 | — | A0A5C2GQT9 |
| H | — | protein | 131 | — | — |
| F | — | protein | 183 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 2 copies · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7WP5 · Cryo-EM structure of SARS-CoV-2 Omicron S6P trimer in complex with neutralizing antibody… · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A5C2GQT9
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7WP5 · PDBe 7WP5 · UniProt A0A5C2GQT9 · UniProt P0DTC2
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