MolNFT v1 · #190072 · protein
SARS-cov-2 omicron variant spike protein with three XGV347 fabs binding to three closed state rbds
7WEC: “SARS-cov-2 omicron variant spike protein with three XGV347 fabs binding to three closed state rbds”. Electron microscopy, 2 ligands (NAG, BMA). MolNFT v1 #190072 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7WEC
- Type
- protein
- Length
- 3,984 residues
- Chains
- 9
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- NAG, BMA
Structure
electron microscopy · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G, H, I | — | protein | 123 | — | — |
| J, K, L | — | protein | 107 | — | — |
| A, B, C | — | protein | 1098 | — | P0DTC2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 73 copies · chains A, B, C, G, I, H
- BMA · beta-D-mannopyranose · sugar · 5 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7WEC · SARS-CoV-2 Omicron variant spike protein with three XGv347 Fabs binding to three closed… · the same entry in another collection · chain G against G, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7WEC · PDBe 7WEC · UniProt P0DTC2
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