MolNFT v1 · #190005 · protein
Crystal structure of murj squeezed form
7WAG · Lipid II flippase murj: “Crystal structure of murj squeezed form”. X-ray diffraction, 7 pockets (best druggability 0.82). MolNFT v1 #190005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7WAG
- Type
- protein
- Length
- 522 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipid II flippase murj
- UniProt
- P0AF16
- Pockets
- 7 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipid II flippase murj | protein | 522 | 81% helix, 0% strand | P0AF16 |
Ligands and binding sites
- OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 13 copies · chains A
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 752 | 0.82 | 0.85 | 82 | empty |
| 2 | 477 | 0.78 | 0.86 | 52 | empty |
| 3 | 57 | 0.71 | 0.98 | 19 | empty |
| 4 | 63 | 0.45 | 0.82 | 14 | empty |
| 5 | 68 | 0.43 | 0.81 | 14 | OLC |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AF16
- Elsewhere: RCSB PDB 7WAG · PDBe 7WAG · UniProt P0AF16
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