MolNFT v1 · #189961 · protein
Crystal structure of maize RDR2
7W82 · RNA-dependent RNA polymerase: “Crystal structure of maize RDR2”. X-ray diffraction, 9 pockets (best druggability 0.81). MolNFT v1 #189961 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7W82
- Type
- protein
- Length
- 944 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA-dependent RNA polymerase
- EC
- 2.7.7.48
- UniProt
- Q19VG2
- Pockets
- 9 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA-dependent RNA polymerase (EC 2.7.7.48) | protein | 944 | 37% helix, 23% strand | Q19VG2 |
Pockets
9 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 689 | 0.81 | 0.85 | 83 | empty |
| 2 | 945 | 0.78 | 0.80 | 105 | empty |
| 3 | 78 | 0.62 | 0.89 | 21 | empty |
| 4 | 228 | 0.60 | 0.81 | 32 | empty |
| 5 | 185 | 0.59 | 0.82 | 26 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7W82 · Crystal structure of maize RDR2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q19VG2
- Elsewhere: RCSB PDB 7W82 · PDBe 7W82 · UniProt Q19VG2
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