MolNFT v1 · #18994 · protein
Crystal structure of soybean beta-amylase complexed with maltose
1Q6C: “Crystal structure of soybean beta-amylase complexed with maltose”. X-ray diffraction, 2 ligands (GLC, SO4), 4 pockets (best druggability 0.78). MolNFT v1 #18994 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1Q6C
- Type
- protein
- Length
- 490 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-amylase
- EC
- 3.2.1.2
- Ligands
- GLC, SO4
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-amylase (EC 3.2.1.2) | protein | 490 | 40% helix, 12% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 396 | 0.78 | 0.87 | 51 | GLC |
| 2 | 122 | 0.54 | 0.82 | 35 | empty |
| 3 | 140 | 0.43 | 0.75 | 20 | empty |
| 4 | 61 | 0.32 | 0.76 | 17 | empty |
Compared structures
- 1Q6C · Crystal Structure of Soybean Beta-Amylase Complexed with Maltose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1Q6C · PDBe 1Q6C
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