MolNFT v1 · #189836 · protein
Crytasl structure of nats
7VYU · 3-oxoacyl-acp synthase: “Crytasl structure of nats”. X-ray diffraction, 6 pockets (best druggability 0.87). MolNFT v1 #189836 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VYU
- Type
- protein
- Length
- 676 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-acp synthase
- UniProt
- A0A022MLV4
- Pockets
- 6 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 3-oxoacyl-acp synthase | protein | 338 | 40% helix, 23% strand | A0A022MLV4 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 994 | 0.87 | 0.88 | 100 | empty |
| 2 | 228 | 0.60 | 0.81 | 39 | empty |
| 3 | 221 | 0.60 | 0.81 | 39 | empty |
| 4 | 69 | 0.37 | 0.78 | 19 | empty |
| 5 | 69 | 0.34 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 2718 Ų buried · 34 hydrogen bonds · protein-protein
Compared structures
- 7VYU · Crystal structure of NatS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A022MLV4
- Elsewhere: RCSB PDB 7VYU · PDBe 7VYU · UniProt A0A022MLV4
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