MolNFT v1 · #189795 · protein

Helicoverpa armigera pheromone-binding protein PBP1 with Z-9- hexadecenal

7VWA: “Helicoverpa armigera pheromone-binding protein PBP1 with Z-9- hexadecenal”. X-ray diffraction, 1 ligand (81K), 1 pocket (best druggability 0.83). MolNFT v1 #189795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7VWA
Type: protein
Length: 138 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PBP1
UniProt: F5ANH9
Ligands: 81K
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 63% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PBP1	protein	138	63% helix, 1% strand	F5ANH9

Ligands and binding sites

81K · (Z)-hexadec-9-enal · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	345	0.83	0.91	36	81K

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

7VWA · Helicoverpa armigera pheromone-binding protein PBP1 with Z-9-hexadecenal · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F5ANH9
Elsewhere: RCSB PDB 7VWA · PDBe 7VWA · UniProt F5ANH9

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