MolNFT v1 · #189792 · protein
Cryo-EM structure of formate dehydrogenase 1 from methylorubrum extorquens AM1
7VW6: “Cryo-EM structure of formate dehydrogenase 1 from methylorubrum extorquens AM1”. Electron microscopy, 6 ligands (SF4, FES, MGD). MolNFT v1 #189792 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VW6
- Type
- protein
- Length
- 1,473 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- C5ATT7, C5ATT6
- Ligands
- SF4, FES, MGD, FMN, W, UNX
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 913 | — | C5ATT7 |
| B | — | protein | 560 | — | C5ATT6 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 4 copies · chains A, B
- FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
- MGD · 2-amino-5,6-dimercapto-7-methyl-3,7,8A,9-tetrahydro-8-oxa-1,3,9,10-tetraaza-anthracen-4-one guanosine dinucleotide · ligand · 2 copies · chains A
- FMN · Flavin mononucleotide · ligand · chains B
- W · Tungsten ion · metal · chains A
- UNX · Unknown atom or ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VW6 · Cryo-EM Structure of Formate Dehydrogenase 1 from Methylorubrum extorquens AM1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C5ATT7
- Every structure of UniProt C5ATT6
- Elsewhere: RCSB PDB 7VW6 · PDBe 7VW6 · UniProt C5ATT7 · UniProt C5ATT6
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