MolNFT v1 · #18979 · protein

Ubiquitin recognition by NPL4 zinc-fingers

1Q5W · Homolog of yeast nuclear protein localization 4: “Ubiquitin recognition by NPL4 zinc-fingers”. Solution nmr, 1 ligand (ZN). MolNFT v1 #18979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1Q5W
Type: protein
Length: 107 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Homolog of yeast nuclear protein localization 4; Ubiquitin
UniProt: Q9ES54, P62988
Ligands: ZN

Structure

solution nmr · 2 distinct chains · 10% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Homolog of yeast nuclear protein localization 4	protein	31	0% helix, 19% strand	Q9ES54
B	Ubiquitin	protein	76	14% helix, 33% strand	P62988

Ligands and binding sites

ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 403 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

1Q5W · Ubiquitin Recognition by Npl4 Zinc-Fingers · the same entry in another collection · chain A against A, TM-score 1.00
Q9ES54 · AlphaFold monomer V2.0 prediction for nuclear protein localization protein 4 homolog… · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ES54
Every structure of UniProt P62988
Elsewhere: RCSB PDB 1Q5W · PDBe 1Q5W · UniProt Q9ES54 · UniProt P62988

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