MolNFT v1 · #189651 · protein + DNA
Cryo-EM structure of streptomyces coelicolor rnap-promoter open complex with one zur dimers
7VPD: “Cryo-EM structure of streptomyces coelicolor rnap-promoter open complex with one zur dimers”. Electron microscopy, 2 ligands (ZN, MG). MolNFT v1 #189651 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VPD
- Type
- protein + DNA
- Length
- 3,699 residues
- Chains
- 11
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A6G2M9E1, Q9L0L0, Q8CJT1, Q9KXS1, A0A7U9DYK1, Q9L2H5
- Ligands
- ZN, MG
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 226 | — | A0A6G2M9E1 |
| B | — | protein | 233 | — | A0A6G2M9E1 |
| C | — | protein | 1116 | — | Q9L0L0 |
| D | — | protein | 1259 | — | Q8CJT1 |
| E | — | protein | 77 | — | Q9KXS1 |
| F | — | protein | 301 | — | A0A7U9DYK1 |
| M, N | — | protein | 131 | — | Q9L2H5 |
| O | — | dna | 84 | — | — |
| P | — | dna | 84 | — | — |
| S | — | protein | 57 | — | A0A6G2M9E1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VPD · Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with one Zur… · the same entry in another collection · chain S against S, TM-score 1.00
- Q9L0L0 · AlphaFold monomer V2.0 prediction for DNA-directed RNA polymerase subunit beta (Q9L0L0) · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6G2M9E1
- Every structure of UniProt Q9L0L0
- Every structure of UniProt Q8CJT1
- Every structure of UniProt Q9KXS1
- Every structure of UniProt A0A7U9DYK1
- Every structure of UniProt Q9L2H5
- Elsewhere: RCSB PDB 7VPD · PDBe 7VPD · UniProt A0A6G2M9E1 · UniProt Q9L0L0 · UniProt Q8CJT1 · UniProt Q9KXS1 · UniProt A0A7U9DYK1 · UniProt Q9L2H5
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