MolNFT v1 · #189648 · protein
Crystal structure of human clpp in complex with ZG111
7VP9: “Crystal structure of human clpp in complex with ZG111”. X-ray diffraction, 2 ligands (7SR, MG). MolNFT v1 #189648 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VP9
- Type
- protein
- Length
- 2,439 residues
- Chains
- 14
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q16740
- Ligands
- 7SR, MG
Structure
x-ray diffraction · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, G | — | protein | 170 | — | Q16740 |
| C | — | protein | 168 | — | Q16740 |
| D | — | protein | 170 | — | Q16740 |
| E | — | protein | 171 | — | Q16740 |
| F | — | protein | 171 | — | Q16740 |
| H | — | protein | 180 | — | Q16740 |
| I | — | protein | 178 | — | Q16740 |
| J | — | protein | 178 | — | Q16740 |
| K | — | protein | 176 | — | Q16740 |
| L | — | protein | 179 | — | Q16740 |
| M, N | — | protein | 179 | — | Q16740 |
Ligands and binding sites
- 7SR · (6s,9as)-N-[(4-bromophenyl)methyl]-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-3,6, 9,9A-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide · ligand · 14 copies · chains A, G, B, C, D, E, F, H, N, I, J, K, L, M
- MG · Magnesium ion · metal · 14 copies · chains A, B, C, D, E, F, G, H, I, J, K, L, M, N
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7VP9 · Crystal structure of human ClpP in complex with ZG111 · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q16740
- Elsewhere: RCSB PDB 7VP9 · PDBe 7VP9 · UniProt Q16740
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