MolNFT v1 · #189623 · RNA
Crystal structure of trnaval from sulfolobus TOKODAII(DEPHOSPHORYLATED)
7VNW · RNA (78-mer): “Crystal structure of trnaval from sulfolobus TOKODAII(DEPHOSPHORYLATED)”. X-ray diffraction, 5 pockets (best druggability 0.74). MolNFT v1 #189623 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VNW
- Type
- RNA
- Length
- 156 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (78-mer)
- Pockets
- 5 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (78-mer) | rna | 78 | — | — |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 686 | 0.74 | 0.81 | 33 | empty |
| 2 | 460 | 0.65 | 0.79 | 26 | empty |
| 3 | 463 | 0.65 | 0.79 | 27 | empty |
| 4 | 436 | 0.62 | 0.77 | 23 | empty |
| 5 | 550 | 0.61 | 0.76 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 215 Ų buried · 6 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 28 modified (nucleotide modification).
Compared structures
- 7VNW · Crystal Structure of tRNAVal from Sulfolobus Tokodaii(Dephosphorylated) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7VNW · PDBe 7VNW
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