MolNFT v1 · #189622 · RNA
Crystal structure of trnaval from sulfolobus tokodaii
7VNV · RNA (78-mer): “Crystal structure of trnaval from sulfolobus tokodaii”. X-ray diffraction, 5 pockets (best druggability 0.72). MolNFT v1 #189622 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7VNV
- Type
- RNA
- Length
- 156 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (78-mer)
- Pockets
- 5 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (78-mer) | rna | 78 | — | — |
Pockets
5 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 672 | 0.72 | 0.80 | 32 | empty |
| 2 | 678 | 0.68 | 0.78 | 30 | empty |
| 3 | 412 | 0.63 | 0.78 | 23 | empty |
| 4 | 445 | 0.62 | 0.77 | 23 | empty |
| 5 | 410 | 0.61 | 0.77 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 222 Ų buried · 5 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 34 modified (nucleotide modification).
Compared structures
- 7VNV · Crystal Structure of tRNAVal from Sulfolobus Tokodaii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7VNV · PDBe 7VNV
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